| 01 | 27 | STONER | DUCATI | 2'00"359 | |
| 02 | 71 | VERMEULEN | SUZUKI | 2'01"381 | + 0'01"022 |
| 03 | 46 | ROSSI | YAMAHA FIAT | 2'01"695 | + 0'01"336 |
| 04 | 65 | CAPIROSSI | DUCATI | 2'01"797 | + 0'01"438 |
| 05 | 33 | MELANDRI | HONDA GRESINI | 2'02"001 | + 0'01"642 |
| 06 | 14 | DE PUNIET | KAWASAKI | 2'02"443 | + 0'02"084 |
| 07 | 19 | JACQUE | KAWASAKI | 2'02"773 | + 0'02"414 |
| 08 | 26 | PEDROSA | HONDA REPSOL | 2'02"776 | + 0'02"417 |
| 09 | 4 | BARROS | DUCATI PRMAC D'ANTIN | 2'03"025 | + 0'02"666 |
| 10 | 21 | HOPKINS | SUZUKI | 2'03"337 | + 0'02"978 |
| 11 | 56 | NAKANO | HONDA KONICA MINOLTA | 2'04"185 | + 0'03"826 |
| 12 | 1 | HAYDEN | HONDA REPSOL | 2'04"353 | + 0'03"994 |
| 13 | 66 | HOFMANN | DUCATI PRMAC D'ANTIN | 2'04"452 | + 0'04"093 |
| 14 | 7 | CHECA | HONDA LCR | 2'04"971 | + 0'04"612 |
| 15 | 24 | ELIAS | HONDA GRESINI | 2'05"592 | + 0'05"233 |
| 16 | 5 | EDWARDS | YAMAHA FIAT | 2'06"254 | + 0'05"895 |
| 17 | 50 | GUINTOLI | YAMAHA TECH 3 | 2'06"426 | + 0'06"067 |
| 18 | 10 | ROBERTS Jr | KR TEAM ROBERTS | 2'06"660 | + 0'06"301 |
| 19 | 80 | ROBERTS | KR TEAM ROBERTS | 2'07"571 | + 0'07"212 |
| 20 | 6 | TAMADA | YAMAHA TECH 3 | 2'09"080 | + 0'08"721 |